SMTL ID : 5oog.1

Human biliverdin IX beta reductase: NADP/Phloxine B ternary complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.33 Å

Oligo State

monomer

Ligands

1 x A0B: Phloxine B(Non-covalent)

A0B.1: 15 residues within 4Å: Chain A: L.81, S.111, A.112, F.113, W.116, P.122, R.124, L.125, V.128, H.132, P.151, P.152, H.153, R.174 Ligands: NAP.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.125, A:H.153 Hydrogen bonds: A:H.153 Salt bridges: A:R.124

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: P.83, T.84, T.85, R.134 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.134, A:R.134 Water bridges: A:T.84, A:T.84

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 6 residues within 4Å: Chain A: S.173, V.175, H.203, Q.204, Y.205, Q.206 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.173, A:Y.205, A:Q.206, A:Q.206

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.4: 32 residues within 4Å: Chain A: G.10, A.11, T.12, G.13, Q.14, T.15, G.16, L.33, R.35, R.39, G.53, D.54, V.55, L.56, L.74, L.75, G.76, T.77, R.78, V.86, M.87, C.109, T.110, S.111, A.112, V.128, H.132, P.151, P.152, H.153, I.154 Ligands: A0B.1 40 PLIP interactions: 40 interactions with chain A Hydrophobic interactions: A:P.151, A:I.154, A:I.154 Hydrogen bonds: A:G.10, A:T.12, A:T.12, A:T.12, A:G.13, A:Q.14, A:Q.14, A:T.15, A:T.15, A:R.35, A:D.54, A:V.55, A:G.76, A:R.78, A:H.132, A:I.154 Water bridges: A:G.10, A:A.11, A:G.16, A:R.35, A:R.35, A:R.35, A:R.35, A:R.35, A:R.35, A:R.35, A:R.35, A:R.35, A:R.39, A:T.77, A:T.77 Salt bridges: A:R.35, A:R.39, A:R.78, A:R.78 pi-Cation interactions: A:R.35, A:R.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nesbitt, N.M. et al., In silicoand crystallographic studies identify key structural features of biliverdin IX beta reductase inhibitors having nanomolar potency. J. Biol. Chem. (2018)

Release Date

2018-03-07

Peptides

Flavin reductase (NADPH): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Flavin reductase (NADPH)

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