SMTL ID : 5op6.1

Factor Inhibiting HIF (FIH) in complex with zinc and GSK128863

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.201, D.203, H.281, W.298 Ligands: A0W.4, GOL.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.201, A:D.203, A:H.281

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: K.313, A.314 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.314 SO4.3: 5 residues within 4Å: Chain A: I.137, R.140, G.142, E.143, E.144 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.143, A:E.144 Salt bridges: A:R.140

1 x A0W: 2-[[1,3-dicyclohexyl-4-oxidanyl-2,6-bis(oxidanylidene)pyrimidin-5-yl]carbonylamino]ethanoic acid(Non-covalent)

A0W.4: 23 residues within 4Å: Chain A: Y.95, F.102, L.103, Y.104, Y.147, Q.149, L.190, T.198, P.199, H.201, Y.202, D.203, F.209, K.216, D.239, R.240, Q.241, H.281, I.283, N.296, W.298 Ligands: ZN.1, GOL.5 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.95, A:F.102, A:T.198 Hydrogen bonds: A:Y.147, A:Q.149, A:T.198, A:T.198 Salt bridges: A:K.216

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 8 residues within 4Å: Chain A: Q.149, L.188, D.203, Q.205, R.240, W.298 Ligands: ZN.1, A0W.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.203, A:R.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yeh, T.L. et al., Molecular and cellular mechanisms of HIF prolyl hydroxylase inhibitors in clinical trials. Chem Sci (2017)

Release Date

2017-10-18

Peptides

Hypoxia-inducible factor 1-alpha inhibitor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hypoxia-inducible factor 1-alpha inhibitor