- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.74 Å
- Oligo State
- homo-tetramer
- Ligands
- 36 x GOL: GLYCEROL(Non-functional Binders)
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.10: 9 residues within 4Å:- Chain A: N.50, M.51, D.52, T.247, N.248, S.249, K.290
- Ligands: GOL.8, MG.11
12 PLIP interactions:12 interactions with chain A- Hydrogen bonds: A:N.50, A:M.51, A:D.52, A:D.52, A:D.52, A:N.248, A:S.249
- Water bridges: A:N.50, A:K.290, A:K.290, A:K.290
- Salt bridges: A:K.290
PO4.23: 9 residues within 4Å:- Chain B: N.50, M.51, D.52, T.247, N.248, S.249, K.290
- Ligands: GOL.21, MG.24
12 PLIP interactions:12 interactions with chain B- Hydrogen bonds: B:N.50, B:M.51, B:D.52, B:D.52, B:D.52, B:N.248, B:S.249
- Water bridges: B:N.50, B:K.290, B:K.290, B:K.290
- Salt bridges: B:K.290
PO4.36: 9 residues within 4Å:- Chain C: N.50, M.51, D.52, T.247, N.248, S.249, K.290
- Ligands: GOL.34, MG.37
12 PLIP interactions:12 interactions with chain C- Hydrogen bonds: C:N.50, C:M.51, C:D.52, C:D.52, C:T.247, C:N.248, C:S.249
- Water bridges: C:N.50, C:K.290, C:K.290, C:K.290
- Salt bridges: C:K.290
PO4.49: 9 residues within 4Å:- Chain D: N.50, M.51, D.52, T.247, N.248, S.249, K.290
- Ligands: GOL.47, MG.50
12 PLIP interactions:12 interactions with chain D- Hydrogen bonds: D:N.50, D:M.51, D:D.52, D:D.52, D:T.247, D:N.248, D:S.249
- Water bridges: D:N.50, D:K.290, D:K.290, D:K.290
- Salt bridges: D:K.290
- 8 x MG: MAGNESIUM ION(Non-covalent)
MG.11: 4 residues within 4Å:- Chain A: N.50, D.52, D.349
- Ligands: PO4.10
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.52, A:D.349, H2O.2, H2O.2
MG.12: 5 residues within 4Å:- Chain A: R.446, Y.447
- Ligands: DTP.13, MG.38, DTP.39
No protein-ligand interaction detected (PLIP)MG.24: 4 residues within 4Å:- Chain B: N.50, D.52, D.349
- Ligands: PO4.23
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.52, B:D.349, H2O.13, H2O.13
MG.25: 5 residues within 4Å:- Chain B: R.446, Y.447
- Ligands: DTP.26, MG.51, DTP.52
No protein-ligand interaction detected (PLIP)MG.37: 4 residues within 4Å:- Chain C: N.50, D.52, D.349
- Ligands: PO4.36
4 PLIP interactions:2 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.52, C:D.349, H2O.25, H2O.25
MG.38: 5 residues within 4Å:- Chain C: R.446, Y.447
- Ligands: MG.12, DTP.13, DTP.39
No protein-ligand interaction detected (PLIP)MG.50: 4 residues within 4Å:- Chain D: N.50, D.52, D.349
- Ligands: PO4.49
4 PLIP interactions:2 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.52, D:D.349, H2O.36, H2O.36
MG.51: 5 residues within 4Å:- Chain D: R.446, Y.447
- Ligands: MG.25, DTP.26, DTP.52
No protein-ligand interaction detected (PLIP)- 4 x DTP: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE(Non-covalent)
DTP.13: 16 residues within 4Å:- Chain A: R.142, D.143, I.150, N.152, F.352, L.356, K.360, Q.443, R.446, Y.447
- Chain C: K.360, R.446
- Ligands: GOL.7, MG.12, MG.38, DTP.39
19 PLIP interactions:13 interactions with chain A, 6 interactions with chain C- Hydrophobic interactions: A:F.352
- Hydrogen bonds: A:R.142, A:N.152, A:N.152, A:Q.443, A:Y.447, A:Y.447
- Water bridges: A:R.142, C:R.446, C:R.446, C:Y.447
- Salt bridges: A:R.142, A:R.142, A:K.360, A:R.446, C:K.360, C:K.360, C:R.446
- pi-Stacking: A:F.352
DTP.26: 16 residues within 4Å:- Chain B: R.142, D.143, I.150, N.152, F.352, L.356, K.360, Q.443, R.446, Y.447
- Chain D: K.360, R.446
- Ligands: GOL.20, MG.25, MG.51, DTP.52
18 PLIP interactions:5 interactions with chain D, 13 interactions with chain B- Water bridges: D:R.446, D:Y.447, B:R.142
- Salt bridges: D:K.360, D:K.360, D:R.446, B:R.142, B:R.142, B:K.360, B:R.446
- Hydrophobic interactions: B:F.352
- Hydrogen bonds: B:R.142, B:N.152, B:N.152, B:Q.443, B:Y.447, B:Y.447
- pi-Stacking: B:F.352
DTP.39: 16 residues within 4Å:- Chain A: K.360, R.446
- Chain C: R.142, D.143, I.150, N.152, F.352, L.356, K.360, Q.443, R.446, Y.447
- Ligands: MG.12, DTP.13, GOL.33, MG.38
19 PLIP interactions:14 interactions with chain C, 5 interactions with chain A- Hydrophobic interactions: C:F.352
- Hydrogen bonds: C:R.142, C:N.152, C:N.152, C:Q.443, C:Y.447
- Water bridges: C:R.142, C:R.142, C:Y.447, A:R.446, A:R.446
- Salt bridges: C:R.142, C:R.142, C:K.360, C:R.446, A:K.360, A:K.360, A:R.446
- pi-Stacking: C:F.352
DTP.52: 16 residues within 4Å:- Chain B: K.360, R.446
- Chain D: R.142, D.143, I.150, N.152, F.352, L.356, K.360, Q.443, R.446, Y.447
- Ligands: MG.25, DTP.26, GOL.46, MG.51
19 PLIP interactions:14 interactions with chain D, 5 interactions with chain B- Hydrophobic interactions: D:F.352
- Hydrogen bonds: D:R.142, D:N.152, D:N.152, D:Q.443, D:Y.447
- Water bridges: D:R.142, D:R.142, D:Y.447, B:R.446, B:R.446
- Salt bridges: D:R.142, D:R.142, D:K.360, D:R.446, B:K.360, B:K.360, B:R.446
- pi-Stacking: D:F.352
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hnizda, A. et al., Relapsed acute lymphoblastic leukemia-specific mutations in NT5C2 cluster into hotspots driving intersubunit stimulation. Leukemia (2018)
- Release Date
- 2018-06-13
- Peptides
- Cytosolic purine 5'-nucleotidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.74 Å
- Oligo State
- homo-tetramer
- Ligands
- 36 x GOL: GLYCEROL(Non-functional Binders)
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 4 x DTP: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hnizda, A. et al., Relapsed acute lymphoblastic leukemia-specific mutations in NT5C2 cluster into hotspots driving intersubunit stimulation. Leukemia (2018)
- Release Date
- 2018-06-13
- Peptides
- Cytosolic purine 5'-nucleotidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A