SMTL ID : 5opl.1

Crystal structure of K25E cN-II mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

36 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: S.59, L.60, A.61, K.64, R.386 Ligand excluded by PLIP GOL.2: 8 residues within 4Å: Chain A: F.302, D.303, I.305, L.340, Q.341, H.342, G.343, I.344 Ligand excluded by PLIP GOL.3: 4 residues within 4Å: Chain A: K.381 Chain C: R.163, K.381, Y.476 Ligand excluded by PLIP GOL.4: 5 residues within 4Å: Chain A: P.115, T.116, E.397, Y.453, G.457 Ligand excluded by PLIP GOL.5: 6 residues within 4Å: Chain A: F.176, R.221, V.224, D.225, H.228, Y.229 Ligand excluded by PLIP GOL.6: 9 residues within 4Å: Chain A: D.73, Y.79, Y.84, F.176, H.228, L.233, K.234, S.270, Y.274 Ligand excluded by PLIP GOL.7: 2 residues within 4Å: Chain A: N.173, F.373 Ligand excluded by PLIP GOL.8: 8 residues within 4Å: Chain A: F.191, T.192, N.193, C.194, P.195, Y.197, T.198, S.199 Ligand excluded by PLIP GOL.9: 5 residues within 4Å: Chain A: Y.170, R.214, F.217, Q.218, R.221 Ligand excluded by PLIP GOL.11: 5 residues within 4Å: Chain B: S.59, L.60, A.61, K.64, R.386 Ligand excluded by PLIP GOL.12: 8 residues within 4Å: Chain B: F.302, D.303, I.305, L.340, Q.341, H.342, G.343, I.344 Ligand excluded by PLIP GOL.13: 4 residues within 4Å: Chain B: K.381 Chain D: R.163, K.381, Y.476 Ligand excluded by PLIP GOL.14: 5 residues within 4Å: Chain B: P.115, T.116, E.397, Y.453, G.457 Ligand excluded by PLIP GOL.15: 6 residues within 4Å: Chain B: F.176, R.221, V.224, D.225, H.228, Y.229 Ligand excluded by PLIP GOL.16: 9 residues within 4Å: Chain B: D.73, Y.79, Y.84, F.176, H.228, L.233, K.234, S.270, Y.274 Ligand excluded by PLIP GOL.17: 2 residues within 4Å: Chain B: N.173, F.373 Ligand excluded by PLIP GOL.18: 8 residues within 4Å: Chain B: F.191, T.192, N.193, C.194, P.195, Y.197, T.198, S.199 Ligand excluded by PLIP GOL.19: 5 residues within 4Å: Chain B: Y.170, R.214, F.217, Q.218, R.221 Ligand excluded by PLIP GOL.21: 5 residues within 4Å: Chain C: S.59, L.60, A.61, K.64, R.386 Ligand excluded by PLIP GOL.22: 8 residues within 4Å: Chain C: F.302, D.303, I.305, L.340, Q.341, H.342, G.343, I.344 Ligand excluded by PLIP GOL.23: 4 residues within 4Å: Chain A: R.163, K.381, Y.476 Chain C: K.381 Ligand excluded by PLIP GOL.24: 5 residues within 4Å: Chain C: P.115, T.116, E.397, Y.453, G.457 Ligand excluded by PLIP GOL.25: 6 residues within 4Å: Chain C: F.176, R.221, V.224, D.225, H.228, Y.229 Ligand excluded by PLIP GOL.26: 9 residues within 4Å: Chain C: D.73, Y.79, Y.84, F.176, H.228, L.233, K.234, S.270, Y.274 Ligand excluded by PLIP GOL.27: 2 residues within 4Å: Chain C: N.173, F.373 Ligand excluded by PLIP GOL.28: 8 residues within 4Å: Chain C: F.191, T.192, N.193, C.194, P.195, Y.197, T.198, S.199 Ligand excluded by PLIP GOL.29: 5 residues within 4Å: Chain C: Y.170, R.214, F.217, Q.218, R.221 Ligand excluded by PLIP GOL.31: 5 residues within 4Å: Chain D: S.59, L.60, A.61, K.64, R.386 Ligand excluded by PLIP GOL.32: 8 residues within 4Å: Chain D: F.302, D.303, I.305, L.340, Q.341, H.342, G.343, I.344 Ligand excluded by PLIP GOL.33: 4 residues within 4Å: Chain B: R.163, K.381, Y.476 Chain D: K.381 Ligand excluded by PLIP GOL.34: 5 residues within 4Å: Chain D: P.115, T.116, E.397, Y.453, G.457 Ligand excluded by PLIP GOL.35: 6 residues within 4Å: Chain D: F.176, R.221, V.224, D.225, H.228, Y.229 Ligand excluded by PLIP GOL.36: 9 residues within 4Å: Chain D: D.73, Y.79, Y.84, F.176, H.228, L.233, K.234, S.270, Y.274 Ligand excluded by PLIP GOL.37: 2 residues within 4Å: Chain D: N.173, F.373 Ligand excluded by PLIP GOL.38: 8 residues within 4Å: Chain D: F.191, T.192, N.193, C.194, P.195, Y.197, T.198, S.199 Ligand excluded by PLIP GOL.39: 5 residues within 4Å: Chain D: Y.170, R.214, F.217, Q.218, R.221 Ligand excluded by PLIP

4 x MG: MAGNESIUM ION(Non-covalent)

MG.10: 4 residues within 4Å: Chain A: D.71, D.73, D.370, H.371 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.71, A:D.73, A:D.370, H2O.2, H2O.3 MG.20: 4 residues within 4Å: Chain B: D.71, D.73, D.370, H.371 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.71, B:D.73, B:D.370, H2O.16, H2O.17 MG.30: 4 residues within 4Å: Chain C: D.71, D.73, D.370, H.371 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.71, C:D.73, C:D.370, H2O.30, H2O.31 MG.40: 4 residues within 4Å: Chain D: D.71, D.73, D.370, H.371 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:D.71, D:D.73, D:D.370, H2O.44, H2O.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hnizda, A. et al., Relapsed acute lymphoblastic leukemia-specific mutations in NT5C2 cluster into hotspots driving intersubunit stimulation. Leukemia (2018)

Release Date

2018-06-13

Peptides

Cytosolic purine 5'-nucleotidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Cytosolic purine 5'-nucleotidase