SMTL ID : 5opo.1

Crystal structure of R238G cN-II mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

28 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: T.95, E.372, E.376, Y.432, G.436, L.438 Ligand excluded by PLIP GOL.2: 7 residues within 4Å: Chain A: R.32, V.35, Y.469, Y.473, L.474, F.475, R.476 Ligand excluded by PLIP GOL.3: 7 residues within 4Å: Chain A: D.250, Y.251, V.286, D.287, G.308, K.309, L.310 Ligand excluded by PLIP GOL.4: 8 residues within 4Å: Chain A: F.281, D.282, I.284, L.319, Q.320, H.321, G.322, I.323 Ligand excluded by PLIP GOL.5: 2 residues within 4Å: Chain A: S.273, H.274 Ligand excluded by PLIP GOL.6: 6 residues within 4Å: Chain A: R.142, Q.451, Y.455 Chain C: K.360, Y.455 Ligands: GOL.22 Ligand excluded by PLIP GOL.7: 7 residues within 4Å: Chain A: A.112, Y.113, R.142, R.454 Chain C: K.360, R.454, Y.455 Ligand excluded by PLIP GOL.9: 6 residues within 4Å: Chain B: T.95, E.372, E.376, Y.432, G.436, L.438 Ligand excluded by PLIP GOL.10: 7 residues within 4Å: Chain B: R.32, V.35, Y.469, Y.473, L.474, F.475, R.476 Ligand excluded by PLIP GOL.11: 7 residues within 4Å: Chain B: D.250, Y.251, V.286, D.287, G.308, K.309, L.310 Ligand excluded by PLIP GOL.12: 8 residues within 4Å: Chain B: F.281, D.282, I.284, L.319, Q.320, H.321, G.322, I.323 Ligand excluded by PLIP GOL.13: 2 residues within 4Å: Chain B: S.273, H.274 Ligand excluded by PLIP GOL.14: 6 residues within 4Å: Chain B: R.142, Q.451, Y.455 Chain D: K.360, Y.455 Ligands: GOL.30 Ligand excluded by PLIP GOL.15: 7 residues within 4Å: Chain B: A.112, Y.113, R.142, R.454 Chain D: K.360, R.454, Y.455 Ligand excluded by PLIP GOL.17: 6 residues within 4Å: Chain C: T.95, E.372, E.376, Y.432, G.436, L.438 Ligand excluded by PLIP GOL.18: 7 residues within 4Å: Chain C: R.32, V.35, Y.469, Y.473, L.474, F.475, R.476 Ligand excluded by PLIP GOL.19: 7 residues within 4Å: Chain C: D.250, Y.251, V.286, D.287, G.308, K.309, L.310 Ligand excluded by PLIP GOL.20: 8 residues within 4Å: Chain C: F.281, D.282, I.284, L.319, Q.320, H.321, G.322, I.323 Ligand excluded by PLIP GOL.21: 2 residues within 4Å: Chain C: S.273, H.274 Ligand excluded by PLIP GOL.22: 6 residues within 4Å: Chain A: K.360, Y.455 Chain C: R.142, Q.451, Y.455 Ligands: GOL.6 Ligand excluded by PLIP GOL.23: 7 residues within 4Å: Chain A: K.360, R.454, Y.455 Chain C: A.112, Y.113, R.142, R.454 Ligand excluded by PLIP GOL.25: 6 residues within 4Å: Chain D: T.95, E.372, E.376, Y.432, G.436, L.438 Ligand excluded by PLIP GOL.26: 7 residues within 4Å: Chain D: R.32, V.35, Y.469, Y.473, L.474, F.475, R.476 Ligand excluded by PLIP GOL.27: 7 residues within 4Å: Chain D: D.250, Y.251, V.286, D.287, G.308, K.309, L.310 Ligand excluded by PLIP GOL.28: 8 residues within 4Å: Chain D: F.281, D.282, I.284, L.319, Q.320, H.321, G.322, I.323 Ligand excluded by PLIP GOL.29: 2 residues within 4Å: Chain D: S.273, H.274 Ligand excluded by PLIP GOL.30: 6 residues within 4Å: Chain B: K.360, Y.455 Chain D: R.142, Q.451, Y.455 Ligands: GOL.14 Ligand excluded by PLIP GOL.31: 7 residues within 4Å: Chain B: K.360, R.454, Y.455 Chain D: A.112, Y.113, R.142, R.454 Ligand excluded by PLIP

4 x MG: MAGNESIUM ION(Non-covalent)

MG.8: 3 residues within 4Å: Chain A: D.50, D.52, D.349 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.50, A:D.52, A:D.349, H2O.1, H2O.5, H2O.12 MG.16: 3 residues within 4Å: Chain B: D.50, D.52, D.349 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.50, B:D.52, B:D.349, H2O.19, H2O.22, H2O.30 MG.24: 3 residues within 4Å: Chain C: D.50, D.52, D.349 6 PLIP interactions: 3 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:D.50, C:D.52, C:D.349, H2O.36, H2O.40, H2O.48 MG.32: 3 residues within 4Å: Chain D: D.50, D.52, D.349 6 PLIP interactions: 3 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:D.50, D:D.52, D:D.349, H2O.54, H2O.58, H2O.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hnizda, A. et al., Relapsed acute lymphoblastic leukemia-specific mutations in NT5C2 cluster into hotspots driving intersubunit stimulation. Leukemia (2018)

Release Date

2018-06-13

Peptides

Cytosolic purine 5'-nucleotidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Cytosolic purine 5'-nucleotidase