SMTL ID : 5opp.1

Crystal structure of S408R cN-II mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: D.250, Y.251, V.286, D.287, G.308, L.310 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.251, A:G.308 Water bridges: A:K.252 GOL.2: 5 residues within 4Å: Chain A: S.38, L.39, A.40, K.43, R.365 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.40, A:R.365 GOL.3: 9 residues within 4Å: Chain A: Q.278, F.281, D.282, L.283, I.284, Q.320, H.321, G.322, I.323 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.284, A:G.322, A:G.322 GOL.6: 6 residues within 4Å: Chain B: D.250, Y.251, V.286, D.287, G.308, L.310 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.251, B:G.308 Water bridges: B:K.252 GOL.7: 5 residues within 4Å: Chain B: S.38, L.39, A.40, K.43, R.365 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.40, B:R.365 GOL.8: 9 residues within 4Å: Chain B: Q.278, F.281, D.282, L.283, I.284, Q.320, H.321, G.322, I.323 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:I.284, B:G.322, B:G.322 GOL.11: 6 residues within 4Å: Chain C: D.250, Y.251, V.286, D.287, G.308, L.310 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Y.251, C:G.308 Water bridges: C:K.252 GOL.12: 5 residues within 4Å: Chain C: S.38, L.39, A.40, K.43, R.365 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.40, C:R.365 GOL.13: 9 residues within 4Å: Chain C: Q.278, F.281, D.282, L.283, I.284, Q.320, H.321, G.322, I.323 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:I.284, C:G.322, C:G.322 GOL.16: 6 residues within 4Å: Chain D: D.250, Y.251, V.286, D.287, G.308, L.310 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:Y.251, D:G.308 Water bridges: D:K.252 GOL.17: 5 residues within 4Å: Chain D: S.38, L.39, A.40, K.43, R.365 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:A.40, D:R.365 GOL.18: 9 residues within 4Å: Chain D: Q.278, F.281, D.282, L.283, I.284, Q.320, H.321, G.322, I.323 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:I.284, D:G.322, D:G.322

4 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 2 residues within 4Å: Chain A: T.145, E.146 No protein-ligand interaction detected (PLIP) MG.9: 2 residues within 4Å: Chain B: T.145, E.146 No protein-ligand interaction detected (PLIP) MG.14: 2 residues within 4Å: Chain C: T.145, E.146 No protein-ligand interaction detected (PLIP) MG.19: 2 residues within 4Å: Chain D: T.145, E.146 No protein-ligand interaction detected (PLIP)

4 x BR: BROMIDE ION(Non-covalent)

BR.5: 1 residues within 4Å: Chain A: K.256 Ligand excluded by PLIP BR.10: 1 residues within 4Å: Chain B: K.256 Ligand excluded by PLIP BR.15: 1 residues within 4Å: Chain C: K.256 Ligand excluded by PLIP BR.20: 1 residues within 4Å: Chain D: K.256 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hnizda, A. et al., Relapsed acute lymphoblastic leukemia-specific mutations in NT5C2 cluster into hotspots driving intersubunit stimulation. Leukemia (2018)

Release Date

2018-06-13

Peptides

Cytosolic purine 5'-nucleotidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Cytosolic purine 5'-nucleotidase