SMTL ID : 5oqo.1

Crystal structure of the S. cerevisiae condensin Ycg1-Brn1 subcomplex bound to DNA (crystal form II)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

hetero-1-1-mer

Ligands

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 6 residues within 4Å: Chain A: M.141, D.142, G.145, K.180, F.181, D.183 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.180, A:D.183, A:D.183 TRS.2: 2 residues within 4Å: Chain A: A.80, A.83 No protein-ligand interaction detected (PLIP)

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 9 residues within 4Å: Chain A: F.52, D.55, K.56, Q.113, R.116, H.117, R.120 Chain B: E.94, F.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.117, A:R.120, A:R.120 PGE.4: 4 residues within 4Å: Chain A: N.6, T.7, F.52, W.53 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kschonsak, M. et al., Structural Basis for a Safety-Belt Mechanism That Anchors Condensin to Chromosomes. Cell (2017)

Release Date

2017-10-18

Peptides

Condensin complex subunit 3: A
Condensin complex subunit 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Condensin complex subunit 3

Condensin complex subunit 2

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