- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 4 x CU: COPPER (II) ION(Non-covalent)
- 2 x MAN: alpha-D-mannopyranose(Post Translational Modification)
MAN.5: 5 residues within 4Å:- Chain A: T.14, A.15, D.150, Q.247, F.252
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.247
MAN.16: 8 residues within 4Å:- Chain B: S.12, S.13, T.14, A.149, D.150, Q.247, T.251, P.253
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.150
- Water bridges: B:T.251
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.6: 6 residues within 4Å:- Chain A: A.4, L.6, Q.23, N.26, F.27, N.30
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:F.27
- Hydrogen bonds: A:N.26, A:N.30
NAG.7: 6 residues within 4Å:- Chain A: S.335, N.348
- Chain B: G.221, N.222, M.223
- Ligands: NAG.17
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:N.348
- Water bridges: B:G.221
NAG.17: 4 residues within 4Å:- Chain B: P.219, G.220, N.222
- Ligands: NAG.7
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.222
NAG.18: 5 residues within 4Å:- Chain A: G.221, N.222
- Chain B: W.266, S.335, N.348
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.335, B:N.348
- Water bridges: B:G.336
- 2 x FLC: CITRATE ANION(Non-covalent)
FLC.8: 10 residues within 4Å:- Chain A: P.191, P.192, G.193, S.194, L.241, T.242, T.243, E.244
- Ligands: EDO.11, EDO.12
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:G.193, A:T.243, A:E.244, A:E.244
- Water bridges: A:E.153, A:E.153, A:T.243
FLC.9: 9 residues within 4Å:- Chain A: R.82, R.94, Q.128, A.129, D.132, E.133, N.361, G.362
- Ligands: EDO.10
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:D.132
- Hydrogen bonds: A:Q.128, A:D.132, A:E.133, A:N.361
- Water bridges: A:R.82, A:N.361
- Salt bridges: A:R.82, A:R.82, A:R.94
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.10: 6 residues within 4Å:- Chain A: R.53, Y.124, Q.128, R.131, D.132
- Ligands: FLC.9
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.53, A:R.53, A:Q.128
- Water bridges: A:Q.128, A:R.131
EDO.11: 8 residues within 4Å:- Chain A: Q.175, D.177, P.191, P.192, G.193
- Ligands: FLC.8, EDO.12, EDO.13
No protein-ligand interaction detected (PLIP)EDO.12: 10 residues within 4Å:- Chain A: I.172, P.173, N.174, Q.175, P.192, G.193, S.194
- Ligands: FLC.8, EDO.11, EDO.13
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.174, A:Q.175, A:G.193
EDO.13: 5 residues within 4Å:- Chain A: N.174, Q.175, G.176
- Ligands: EDO.11, EDO.12
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.175
- 1 x PER: PEROXIDE ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Penttinen, L. et al., A new crystal form of Aspergillus oryzae catechol oxidase and evaluation of copper site structures in coupled binuclear copper enzymes. PLoS ONE (2018)
- Release Date
- 2018-05-09
- Peptides
- catechol oxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 4 x CU: COPPER (II) ION(Non-covalent)
- 2 x MAN: alpha-D-mannopyranose(Post Translational Modification)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x FLC: CITRATE ANION(Non-covalent)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x PER: PEROXIDE ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Penttinen, L. et al., A new crystal form of Aspergillus oryzae catechol oxidase and evaluation of copper site structures in coupled binuclear copper enzymes. PLoS ONE (2018)
- Release Date
- 2018-05-09
- Peptides
- catechol oxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
C