SMTL ID : 5or7.1

Atomic structure of the murine norovirus protruding domain and sCD300lf receptor complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-2-1-mer

Ligands

6 x NA: SODIUM ION(Non-functional Binders)

NA.1: 6 residues within 4Å: Chain A: Q.265, T.278, Y.328, P.329, D.330, Y.408 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.278, A:T.278, A:Y.408 NA.2: 4 residues within 4Å: Chain A: P.361, I.405, P.406, E.407 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.406 NA.3: 6 residues within 4Å: Chain B: Q.265, T.278, Y.328, P.329, D.330, Y.408 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.278, B:P.329, B:Y.408 NA.4: 4 residues within 4Å: Chain B: E.292, A.294, T.306, T.308 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.294, B:T.308, B:T.308, B:T.308 NA.5: 6 residues within 4Å: Chain A: N.364, V.365, D.366 Chain C: K.113, G.115, D.117 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:K.113, A:D.366 NA.6: 7 residues within 4Å: Chain C: Y.50, K.52, T.69, A.71, S.72, D.85, Q.87 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:T.69, C:A.71, C:A.71, C:D.85, C:Q.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kilic, T. et al., Atomic Structure of the Murine Norovirus Protruding Domain and Soluble CD300lf Receptor Complex. J. Virol. (2018)

Release Date

2018-03-21

Peptides

Capsid protein: AB
CMRF35-like molecule 1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Capsid protein

CMRF35-like molecule 1