SMTL ID : 5orp.1

Crystal structure of Aurora-A kinase in complex with an allosterically binding fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 20 residues within 4Å: Chain A: L.13, G.14, K.15, G.16, K.17, F.18, G.19, V.21, A.34, K.36, L.68, E.85, A.87, T.91, E.134, N.135, L.137, D.148 Ligands: MG.2, MG.3 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:K.17, A:F.18, A:G.19, A:E.85, A:A.87 Water bridges: A:T.91, A:E.134, A:N.135, A:D.148, A:D.148, A:G.150 Salt bridges: A:K.36, A:K.36

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: N.135, D.148 Ligands: ADP.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.148, H2O.2, H2O.3 MG.3: 2 residues within 4Å: Chain A: D.148 Ligands: ADP.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.148, H2O.1, H2O.1, H2O.3

1 x A5K: 1-[3-chloranyl-5-(trifluoromethyl)pyridin-2-yl]-1,4-diazepane(Non-covalent)

A5K.4: 7 residues within 4Å: Chain A: W.2, F.7, E.26, F.31, L.33, Y.71, I.83 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.29 pi-Stacking: A:F.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McIntyre, P.J. et al., Characterization of Three Druggable Hot-Spots in the Aurora-A/TPX2 Interaction Using Biochemical, Biophysical, and Fragment-Based Approaches. ACS Chem. Biol. (2017)

Release Date

2017-11-01

Peptides

Aurora kinase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aurora kinase A

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