SMTL ID : 5osn.1

Crystal Structure of Bovine Enterovirus 2 determined with Serial Femtosecond X-ray Crystallography

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 11 residues within 4Å: Chain A: I.90, N.91, F.92, V.173, V.175, Y.184, F.186, N.208, L.210, L.213 Chain C: M.24 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.90, A:F.92, A:V.173, A:F.186, A:L.210 Hydrogen bonds: A:F.92, A:N.208 Water bridges: A:N.91, A:N.91, A:V.205, A:Y.209

3 x K: POTASSIUM ION(Non-covalent)

K.2: 4 residues within 4Å: Chain A: T.14, V.15, N.17, N.57 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:V.15, A:N.57 K.3: 6 residues within 4Å: Chain A: T.30, P.31, L.33, Q.34 Chain D: E.63, A.65 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain A Metal complexes: D:E.63, D:A.65, A:L.33 K.5: 3 residues within 4Å: Chain A: S.42 Chain C: D.114, Q.222 No protein-ligand interaction detected (PLIP)

1 x GLU: GLUTAMIC ACID(Non-covalent)

GLU.4: 4 residues within 4Å: Chain A: M.78, Y.95, R.229 Chain C: G.240 4 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C, 2 Ligand-Ligand interactions Salt bridges: A:R.229 Hydrogen bonds: C:A.241, E.4, E.4

1 x OSF: octyl sulfate(Non-covalent)

OSF.6: 2 residues within 4Å: Chain C: T.4, Y.6 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:T.4, C:T.4

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 4 residues within 4Å: Chain C: D.78, N.143, R.144, R.145 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.78, C:R.144, C:R.145 Water bridges: C:D.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roedig, P. et al., High-speed fixed-target serial virus crystallography. Nat. Methods (2017)

Release Date

2017-08-30

Peptides

Capsid protein: A
Capsid protein: B
Capsid protein: C
Capsid protein: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Capsid protein

Capsid protein

Capsid protein

Capsid protein

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