SMTL ID : 5ot0.1 (2 other biounits)

The thermostable L-asparaginase from Thermococcus kodakarensis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: G.10, T.11, D.53, S.54, G.84, T.85, D.86 Chain B: Y.274 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:T.11, A:T.11, A:S.54, A:T.85, A:D.86, A:D.86 Water bridges: A:I.12, A:D.53, A:D.53, A:H.83 PO4.3: 8 residues within 4Å: Chain A: Y.274 Chain B: G.10, T.11, D.53, S.54, G.84, T.85, D.86 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:T.11, B:T.11, B:D.53, B:S.54, B:S.54, B:T.85, B:T.85, B:D.86 Water bridges: B:H.83, B:S.111

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 9 residues within 4Å: Chain A: N.169, A.264, L.265, Y.266, G.267, G.268, D.290, M.291, K.293 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.169, A:N.169, A:G.268, A:K.293 Water bridges: A:K.293 EDO.4: 11 residues within 4Å: Chain B: N.169, T.261, T.262, A.264, L.265, Y.266, G.267, G.268, D.290, M.291, K.293 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.169, B:N.169, B:G.268, B:K.293 Water bridges: B:K.293 EDO.5: 9 residues within 4Å: Chain B: G.7, T.8, G.9, A.13, A.24, L.25, D.48, L.50, N.51 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.9 Water bridges: B:T.8, B:G.9

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.6: 6 residues within 4Å: Chain B: S.26, A.27, D.28, E.45, T.46, D.48 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.28, B:T.46, B:T.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, J. et al., Structure and function of the thermostable L-asparaginase from Thermococcus kodakarensis. Acta Crystallogr D Struct Biol (2017)

Release Date

2017-11-08

Peptides

L-asparaginase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

L-asparaginase

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