SMTL ID : 5oti.1

The crystal structure of CK2alpha in complex with compound 27

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

monomer

Ligands

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 7 residues within 4Å: Chain A: Q.35, Y.38, I.68, V.100, D.102, P.103, A.109 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.38, A:V.100 Hydrogen bonds: A:Q.35, A:D.102 ACT.2: 4 residues within 4Å: Chain A: K.67, F.112, I.173, D.174 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.112 Hydrogen bonds: A:D.174 Water bridges: A:E.80, A:W.175 Salt bridges: A:K.67 ACT.3: 6 residues within 4Å: Chain A: R.79, R.154, L.177, N.188, R.190, V.191 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:N.188, A:V.191 Water bridges: A:R.154 Salt bridges: A:K.76, A:R.79, A:R.154

1 x AOK: ~{N}-[[3-chloranyl-4-(2-ethylphenyl)phenyl]methyl]-2-(5-methyl-1~{H}-benzimidazol-2-yl)ethanamine(Non-covalent)

AOK.4: 15 residues within 4Å: Chain A: L.44, V.52, N.117, F.120, L.123, Y.124, M.136, P.158, H.159, V.161, M.162, I.163, I.173, M.220, M.224 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.44, A:V.52, A:F.120, A:L.123, A:Y.124, A:P.158, A:V.161, A:I.163, A:I.173, A:M.224 Hydrogen bonds: A:V.161 Water bridges: A:I.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Iegre, J. et al., Second-generation CK2 alpha inhibitors targeting the alpha D pocket. Chem Sci (2018)

Release Date

2018-02-28

Peptides

Casein kinase II subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Casein kinase II subunit alpha

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