SMTL ID : 5otr.1

The crystal structure of CK2alpha in complex with compound 14

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

monomer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 5 residues within 4Å: Chain A: K.76, R.79, R.154, L.177, N.188 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:N.188 Water bridges: A:R.154, A:E.179 Salt bridges: A:K.76, A:R.79, A:R.154 ACT.2: 6 residues within 4Å: Chain A: Q.35, Y.38, V.100, D.102, P.103, A.109 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.38, A:V.100 Hydrogen bonds: A:D.102 Water bridges: A:Q.35

3 x AU8: [3,5-bis(chloranyl)-4-phenyl-phenyl]methylazanium(Non-covalent)

AU8.3: 12 residues within 4Å: Chain A: F.120, L.123, Y.124, L.127, I.132, M.136, I.139, P.158, V.161, I.163, M.220, M.224 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.123, A:I.132, A:V.161, A:I.163, A:M.224 Hydrogen bonds: A:V.161 AU8.4: 1 residues within 4Å: Chain A: N.269 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.269 Water bridges: A:N.269 AU8.5: 6 residues within 4Å: Chain A: E.281, V.284, Q.289, V.292, P.294, L.297 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.281, A:P.294, A:L.297 Hydrogen bonds: A:V.292

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.6: 8 residues within 4Å: Chain A: V.52, V.65, I.94, E.113, V.115, H.159, M.162, I.173 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.113, A:V.115, A:H.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Iegre, J. et al., Second-generation CK2 alpha inhibitors targeting the alpha D pocket. Chem Sci (2018)

Release Date

2018-02-28

Peptides

Casein kinase II subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Casein kinase II subunit alpha

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