SMTL ID : 5otz.1

The crystal structure of CK2alpha in complex with compound 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.46 Å

Oligo State

monomer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 5 residues within 4Å: Chain A: K.76, R.79, R.154, L.177, N.188 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:N.188 Water bridges: A:R.154, A:E.179 Salt bridges: A:R.79, A:R.154 ACT.2: 7 residues within 4Å: Chain A: Q.35, Y.38, I.68, V.100, D.102, P.103, A.109 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.38, A:V.100 Hydrogen bonds: A:D.102 Water bridges: A:Q.35, A:Q.35

1 x TFA: trifluoroacetic acid(Non-covalent)

TFA.3: 5 residues within 4Å: Chain A: V.65, K.67, F.112, I.173, D.174 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.174 Water bridges: A:E.80, A:W.175 Salt bridges: A:K.67

2 x AUT: [3,5-bis(chloranyl)-4-(2-ethylphenyl)phenyl]methanamine(Non-covalent)

AUT.4: 10 residues within 4Å: Chain A: F.120, L.123, Y.124, I.132, I.139, P.158, V.161, I.163, M.220, M.224 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.120, A:L.123, A:Y.124, A:I.132, A:P.158, A:M.224 Hydrogen bonds: A:V.161 Water bridges: A:I.163 AUT.5: 1 residues within 4Å: Chain A: N.269 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:N.269

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Iegre, J. et al., Second-generation CK2 alpha inhibitors targeting the alpha D pocket. Chem Sci (2018)

Release Date

2018-02-28

Peptides

Casein kinase II subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Casein kinase II subunit alpha

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