SMTL ID : 5ou5.1

Crystal structure of maize chloroplastic photosynthetic NADP(+)-dependent malic enzyme

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

16 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: F.266, A.274, L.277, L.278, N.289 Ligand excluded by PLIP NA.2: 4 residues within 4Å: Chain A: S.148, K.150 Chain B: R.63, P.68 Ligand excluded by PLIP NA.3: 4 residues within 4Å: Chain A: R.106, Y.572, R.573, Y.575 Ligand excluded by PLIP NA.5: 5 residues within 4Å: Chain A: P.142, Q.143, G.144 Chain B: Y.38, L.65 Ligand excluded by PLIP NA.6: 5 residues within 4Å: Chain B: M.98, Q.101, V.193, G.194, A.197 Ligand excluded by PLIP NA.7: 6 residues within 4Å: Chain B: Y.479, I.480, P.482, G.483, S.533, I.536 Ligand excluded by PLIP NA.8: 5 residues within 4Å: Chain B: H.45, E.105, R.106, P.207, Y.568 Ligand excluded by PLIP NA.9: 6 residues within 4Å: Chain B: S.429, S.431, S.437, S.456, G.457, S.458 Ligand excluded by PLIP NA.10: 6 residues within 4Å: Chain C: Y.479, I.480, P.482, G.483, S.533, I.536 Ligand excluded by PLIP NA.11: 6 residues within 4Å: Chain C: S.429, S.431, S.437, S.456, G.457, S.458 Ligand excluded by PLIP NA.12: 4 residues within 4Å: Chain C: Y.94, M.98, V.123, G.194 Ligand excluded by PLIP NA.13: 6 residues within 4Å: Chain C: D.174, E.176, Y.243, F.269, A.270, N.273 Ligand excluded by PLIP NA.14: 5 residues within 4Å: Chain C: F.266, A.274, L.277, L.278, N.289 Ligand excluded by PLIP NA.15: 5 residues within 4Å: Chain C: P.142, Q.143, G.144 Chain D: Y.38, L.65 Ligand excluded by PLIP NA.16: 7 residues within 4Å: Chain D: S.429, S.431, N.432, S.437, S.456, G.457, S.458 Ligand excluded by PLIP NA.17: 5 residues within 4Å: Chain D: Y.135, F.139, Q.143, Y.146, M.189 Ligand excluded by PLIP

1 x K: POTASSIUM ION(Non-covalent)

K.4: 3 residues within 4Å: Chain A: L.179, G.180, N.432 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alvarez, C.E. et al., Molecular adaptations of NADP-malic enzyme for its function in C4photosynthesis in grasses. Nat.Plants (2019)

Release Date

2018-12-12

Peptides

Malic enzyme: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Malic enzyme