SMTL ID : 5ou9.1

Crystal structure of Glycoprotein VI in complex with collagen-peptide (GPO)3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-2-3-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: P.33, P.34, N.74 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.33 NAG.4: 2 residues within 4Å: Chain B: P.33, N.74 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:P.33 Hydrogen bonds: B:N.74

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 4 residues within 4Å: Chain A: E.86, W.132, R.134, P.160 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.134, A:R.134 PG4.5: 6 residues within 4Å: Chain B: E.86, W.132, R.134, P.160, Y.161, W.163 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:W.132, B:R.134, B:R.134

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain B: L.19, E.130 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feitsma, L.J. et al., Structural insights into collagen-binding by platelet receptor Glycoprotein VI. To be Published

Release Date

2018-09-05

Peptides

Platelet glycoprotein VI: AB
(GPO)3: CDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Platelet glycoprotein VI

(GPO)3

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