SMTL ID : 5ov3.1

Structure of the RbBP5 beta-propeller domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-dimer

Ligands

1 x GLU- PRO- LYS- GLN- THR- GLY: Retinoblastoma-binding protein 5(Non-covalent)

GLU-PRO-LYS-GLN-THR-GLY.1: 9 residues within 4Å: Chain A: K.338, E.342 Chain B: L.287, V.288, K.289, I.290, L.291, H.292, T.294 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:H.292 Hydrogen bonds: B:I.290, B:I.290, B:H.292, B:H.292, B:H.292, A:K.338, A:E.342

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 8 residues within 4Å: Chain A: Y.266, V.288, K.289, L.291, W.304, P.309, A.323, Q.324 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.289, A:Q.324

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 6 residues within 4Å: Chain A: E.342 Chain B: K.289, L.291, W.304, P.309, Q.324 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:K.289, A:E.342, A:E.342

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mittal, A. et al., The structure of the RbBP5 beta-propeller domain reveals a surface with potential nucleic acid binding sites. Nucleic Acids Res. (2018)

Release Date

2018-03-28

Peptides

Retinoblastoma-binding protein 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Retinoblastoma-binding protein 5