SMTL ID : 5ovc.1

PDZ domain from rat Shank3 bound to the C terminus of GKAP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x ACE- GLU- ALA- GLN- THR- ARG- LEU: GKAP C terminus, synthetic peptide(Non-covalent)

ACE-GLU-ALA-GLN-THR-ARG-LEU.1: 19 residues within 4Å: Chain A: G.12, F.13, G.14, F.15, V.16, L.17, R.18, G.19, A.20, K.21, T.24, Y.40, E.42, S.43, D.45, H.74, V.78, I.81, R.82 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:F.15, A:F.15, A:R.18, A:T.24, A:I.81 Hydrogen bonds: A:F.13, A:G.14, A:F.15, A:F.15, A:L.17, A:L.17, A:G.19, A:G.19, A:K.21, A:K.21, A:Y.40, A:E.42, A:H.74 Water bridges: A:R.18, A:R.18, A:S.43, A:D.45, A:R.82 Salt bridges: A:R.18, A:D.45

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: K.21, A.22, H.74, K.75 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ponna, S.K. et al., Structural basis for PDZ domain interactions in the post-synaptic density scaffolding protein Shank3. J. Neurochem. (2018)

Release Date

2018-03-07

Peptides

SH3 and multiple ankyrin repeat domains protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SH3 and multiple ankyrin repeat domains protein 3

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