SMTL ID : 5ovq.1

Crystal Structure of the peroxiredoxin (AhpC2) from the Hyperthermophilic bacteria Aquifex aeolicus VF

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-5-7-mer

Ligands

11 x UNL: UNKNOWN LIGAND

UNL.1: 7 residues within 4Å: Chain A: P.42, T.46, C.49, R.126, L.145, P.195 Chain D: F.79 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain D Hydrophobic interactions: A:L.145, A:P.195, D:F.79 Hydrogen bonds: A:T.46, A:R.126 Water bridges: A:T.46 UNL.2: 7 residues within 4Å: Chain B: P.42, T.46, C.49, R.126, L.145, P.195 Chain F: F.79 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain F Hydrophobic interactions: B:L.145, B:P.195, F:F.79 Hydrogen bonds: B:T.46, B:R.126 UNL.3: 5 residues within 4Å: Chain D: P.42, T.46, C.49, L.145, P.195 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:L.145, D:P.195 Hydrogen bonds: D:T.46, D:T.46, D:R.126 UNL.4: 7 residues within 4Å: Chain E: P.42, T.46, C.49, F.123, R.126, L.145 Chain H: F.79 5 PLIP interactions: 4 interactions with chain E, 1 interactions with chain H Hydrophobic interactions: E:F.123, E:L.145, H:F.79 Hydrogen bonds: E:T.46 Water bridges: E:T.46 UNL.5: 6 residues within 4Å: Chain B: F.79 Chain F: P.42, T.46, C.49, R.126, L.145 5 PLIP interactions: 4 interactions with chain F, 1 interactions with chain B Hydrophobic interactions: F:L.145, B:F.79 Hydrogen bonds: F:T.46, F:R.126 Water bridges: F:T.46 UNL.6: 6 residues within 4Å: Chain G: P.42, T.46, C.49, F.123, R.126 Chain I: F.79 5 PLIP interactions: 1 interactions with chain I, 4 interactions with chain G Hydrophobic interactions: I:F.79, G:F.123 Hydrogen bonds: G:T.46, G:R.126 Water bridges: G:T.46 UNL.7: 4 residues within 4Å: Chain H: P.42, T.46, C.49, P.195 4 PLIP interactions: 4 interactions with chain H Hydrophobic interactions: H:P.195 Hydrogen bonds: H:T.46 Water bridges: H:R.126, H:R.126 UNL.8: 6 residues within 4Å: Chain I: P.42, T.46, C.49, R.126, L.145, P.195 5 PLIP interactions: 5 interactions with chain I Hydrophobic interactions: I:L.145, I:P.195 Hydrogen bonds: I:T.46, I:T.46, I:R.126 UNL.9: 7 residues within 4Å: Chain J: P.42, T.46, C.49, R.126, L.145, P.195 Chain K: F.79 6 PLIP interactions: 5 interactions with chain J, 1 interactions with chain K Hydrophobic interactions: J:L.145, J:P.195, K:F.79 Hydrogen bonds: J:T.46, J:T.46, J:R.126 UNL.10: 6 residues within 4Å: Chain J: F.79 Chain K: P.42, T.46, C.49, F.123, R.126 5 PLIP interactions: 4 interactions with chain K, 1 interactions with chain J Hydrophobic interactions: K:F.123, J:F.79 Hydrogen bonds: K:T.46, K:T.46, K:R.126 UNL.11: 5 residues within 4Å: Chain C: F.79 Chain L: P.42, T.46, C.49, P.195 5 PLIP interactions: 4 interactions with chain L, 1 interactions with chain C Hydrophobic interactions: L:P.195, C:F.79 Hydrogen bonds: L:T.46, L:T.46, L:R.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, W. et al., Structural properties of the peroxiredoxin AhpC2 from the hyperthermophilic eubacterium Aquifex aeolicus. Biochim Biophys Acta Gen Subj (2018)

Release Date

2018-10-10

Peptides

Peroxiredoxin: ABCEK
Peroxiredoxin: DFGHIJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

E
E

K
K

D
D

F
F

G
G

H
H

I
I

J
J

L
L

Peroxiredoxin

Peroxiredoxin