SMTL ID : 5ovv.1

PDZ domain from rat Shank3 bound to the C terminus of ProSAPiP1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x ACE- ILE- GLU- SER- THR- GLU- ILE: Leucine zipper putative tumor suppressor 3(Non-covalent)

ACE-ILE-GLU-SER-THR-GLU-ILE.1: 19 residues within 4Å: Chain A: G.39, F.40, G.41, F.42, V.43, L.44, R.45, G.46, A.47, K.48, T.51, Y.67, E.69, H.101, K.102, V.105, I.108, R.109, L.115 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:F.40, A:F.42, A:F.42, A:R.45, A:A.47, A:K.48, A:I.108 Hydrogen bonds: A:F.40, A:G.41, A:F.42, A:F.42, A:L.44, A:L.44, A:G.46, A:G.46, A:K.48, A:E.69, A:H.101 Water bridges: A:R.45, A:R.45, A:K.48, A:R.109, A:R.109 Salt bridges: A:K.48, A:K.102

2 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.2: 4 residues within 4Å: Chain A: V.71, W.78, R.83, T.84 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.84 Water bridges: A:V.71 SCN.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ponna, S.K. et al., Structural basis for PDZ domain interactions in the post-synaptic density scaffolding protein Shank3. J. Neurochem. (2018)

Release Date

2018-03-07

Peptides

SH3 and multiple ankyrin repeat domains protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SH3 and multiple ankyrin repeat domains protein 3