SMTL ID : 5ow0.1

Crystal structure of an electron transfer flavoprotein from Geobacter metallireducens

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 19 residues within 4Å: Chain A: L.6, A.7, K.8, D.39, V.60, S.61, Y.62, I.95, L.99, A.114, G.115, Q.117, S.118, M.121, R.123, G.124, V.125, V.126, P.127 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:D.39, A:S.61, A:Y.62, A:Y.62, A:G.115, A:Q.117, A:S.118, A:S.118, A:R.123, A:G.124, A:V.125, A:V.126 Water bridges: A:K.8, A:R.123 Salt bridges: A:R.123

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.2: 35 residues within 4Å: Chain A: Y.13, E.14, L.37, Y.38, Q.117, S.118, S.119 Chain B: G.183, R.184, G.185, S.209, R.210, G.211, Q.223, I.224, G.225, Q.226, T.227, G.228, G.240, V.241, S.242, G.243, A.244, Q.246, H.247, I.260, N.261, K.262, D.263, A.266, G.278, D.279, Y.280, K.281 35 PLIP interactions: 30 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:R.184, B:R.184, B:G.185, B:S.209, B:S.209, B:R.210, B:G.211, B:Q.223, B:I.224, B:T.227, B:G.228, B:G.240, B:S.242, B:S.242, B:H.247, B:N.261, B:N.261, B:K.262, B:D.263, B:D.279, B:D.279, B:Y.280 Water bridges: B:R.210, B:S.242, B:G.243, B:D.263, B:D.263, B:D.263, B:D.263 pi-Cation interactions: B:R.210 Hydrophobic interactions: A:Y.13, A:L.37, A:L.37, A:Y.38, A:Q.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vogt, M.S. et al., Structural and functional characterization of an electron transfer flavoprotein involved in toluene degradation in strictly anaerobic bacteria. J.Bacteriol. (2019)

Release Date

2018-10-10

Peptides

Electron transfer flavoprotein, beta subunit: A
Electron transfer flavoprotein, alpha subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Electron transfer flavoprotein, beta subunit

Electron transfer flavoprotein, alpha subunit