SMTL ID : 5ow2.1

Japanese encephalitis virus capsid protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

homo-dimer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: P.50, R.52, F.53 Ligands: FLC.3 No protein-ligand interaction detected (PLIP) EDO.2: 6 residues within 4Å: Chain A: K.38, M.42, L.45 Chain B: K.38, M.42, L.45 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:M.42 EDO.4: 1 residues within 4Å: Chain B: K.104 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.104, B:K.104 EDO.5: 3 residues within 4Å: Chain B: P.50, R.52, F.53 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.64

1 x FLC: CITRATE ANION(Non-covalent)

FLC.3: 3 residues within 4Å: Chain A: P.50, V.51 Ligands: EDO.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.50 Hydrogen bonds: A:V.51, A:R.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Poonsiri, T. et al., Crystal Structure of the Japanese Encephalitis Virus Capsid Protein. Viruses (2019)

Release Date

2018-10-10

Peptides

capsid protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

capsid protein