SMTL ID : 5oxf.1

An oligomerised bacterial dynamin pair provides a mechanism for the long range sensing and tethering of membranes

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.94 Å

Oligo State

hetero-2-2-mer

Ligands

4 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 15 residues within 4Å: Chain A: M.171, N.172, G.174, K.175, S.176, S.177, V.190, S.191, N.192, K.359, D.361, L.362, S.400, A.401, K.402 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:K.175, A:S.176, A:S.177, A:S.177, A:G.189, A:N.192, A:N.192, A:K.359, A:S.400, A:A.401, A:K.402 Salt bridges: A:K.175, A:D.361 GDP.2: 16 residues within 4Å: Chain B: M.171, N.172, G.174, K.175, S.176, S.177, G.189, V.190, S.191, N.192, K.359, D.361, L.362, S.400, A.401, K.402 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:G.174, B:K.175, B:S.176, B:S.177, B:S.177, B:G.189, B:N.192, B:N.192, B:K.359, B:K.359, B:S.400, B:A.401, B:K.402 Salt bridges: B:K.175, B:D.361 GDP.3: 12 residues within 4Å: Chain C: S.74, S.75, G.76, K.77, S.78, S.79, P.91, N.219, Q.220, D.222, K.223, K.253 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:S.75, C:G.76, C:K.77, C:S.78, C:S.79, C:N.219, C:Q.220, C:K.223, C:K.223 Salt bridges: C:K.77, C:D.222 GDP.4: 12 residues within 4Å: Chain D: S.74, S.75, G.76, K.77, S.78, S.79, P.91, P.96, N.219, Q.220, K.223, K.253 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:S.75, D:G.76, D:K.77, D:S.78, D:S.78, D:S.79, D:N.219, D:Q.220, D:K.253 Salt bridges: D:K.77 pi-Cation interactions: D:K.253

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, J. et al., Structural basis for membrane tethering by a bacterial dynamin-like pair. Nat Commun (2018)

Release Date

2018-09-05

Peptides

GTP-binding protein: AB
GTP-binding protein: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

GTP-binding protein

GTP-binding protein

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