SMTL ID : 5oxh.1

C-terminally retracted ubiquitin T66V/L67N mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.12, I.13, T.14, K.33 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.14 Water bridges: A:K.33, A:K.33 Salt bridges: A:K.33 SO4.2: 3 residues within 4Å: Chain A: R.42, R.74, G.75 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.75 Water bridges: A:R.42, A:L.73, A:R.74, A:R.74 Salt bridges: A:R.42, A:R.74 SO4.3: 3 residues within 4Å: Chain A: R.42, I.44, R.72 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.72 Salt bridges: A:R.42, A:R.72 SO4.4: 2 residues within 4Å: Chain A: Q.49, R.74 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.49, A:Q.49 Water bridges: A:R.74, A:R.74, A:R.74 Salt bridges: A:R.74 SO4.5: 2 residues within 4Å: Chain A: E.51, R.54 6 PLIP interactions: 6 interactions with chain A Water bridges: A:E.51, A:E.51, A:R.54, A:Y.59, A:Y.59 Salt bridges: A:R.54 SO4.6: 1 residues within 4Å: Chain A: K.33 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.33 SO4.7: 1 residues within 4Å: Chain A: S.20 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.20, A:S.20 Water bridges: A:E.18, A:S.20 SO4.8: 1 residues within 4Å: Chain A: K.6 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.6, A:K.6 Salt bridges: A:K.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gladkova, C. et al., An invisible ubiquitin conformation is required for efficient phosphorylation by PINK1. EMBO J. (2017)

Release Date

2017-11-22

Peptides

Ubiquitin T66V/L67N mutant: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ubiquitin T66V/L67N mutant

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