SMTL ID : 5oy9.1

VSV G CR3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.163 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain A: N.320 No protein-ligand interaction detected (PLIP)

4 x CA: CALCIUM ION(Non-covalent)

CA.3: 1 residues within 4Å: Chain A: E.286 No protein-ligand interaction detected (PLIP) CA.4: 1 residues within 4Å: Chain A: W.360 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:W.360 CA.5: 1 residues within 4Å: Chain A: D.274 No protein-ligand interaction detected (PLIP) CA.6: 6 residues within 4Å: Chain B: F.19, D.22, D.24, D.26, D.32, E.33 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:F.19, B:D.24, B:D.26, B:D.32, B:E.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nikolic, J. et al., Structural basis for the recognition of LDL-receptor family members by VSV glycoprotein. Nat Commun (2018)

Release Date

2018-03-21

Peptides

Glycoprotein G: A
Low-density lipoprotein receptor: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Glycoprotein G

Low-density lipoprotein receptor

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