SMTL ID : 5oyc.1 (1 other biounit)

GH5 endo-xyloglucanase from Cellvibrio japonicus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

11 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: N.144, N.145, I.146, T.147, N.185, E.187, Q.191 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.146, A:E.187, A:Q.191 GOL.2: 3 residues within 4Å: Chain A: Y.101, A.112, W.113 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.112 GOL.3: 1 residues within 4Å: Chain A: T.282 No protein-ligand interaction detected (PLIP) GOL.4: 6 residues within 4Å: Chain A: R.323, T.325, L.336, R.339, F.381, D.382 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.323, A:R.323, A:R.339, A:F.381 Water bridges: A:Q.383, A:Q.383 GOL.5: 7 residues within 4Å: Chain A: N.60, W.71, G.72, N.73, N.362, G.363, G.364 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.60, A:G.72 Water bridges: A:N.362 GOL.6: 4 residues within 4Å: Chain A: S.110, A.111, A.112 Ligands: GOL.9 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.110, A:A.111, A:A.112 GOL.7: 1 residues within 4Å: Chain A: N.188 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.188 GOL.8: 6 residues within 4Å: Chain A: E.183, V.224, T.225, D.226, H.251, Y.253 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.183, A:D.226, A:D.226 Water bridges: A:T.225, A:I.227 GOL.9: 6 residues within 4Å: Chain A: Y.101, A.102, N.103, E.108, S.110 Ligands: GOL.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.102, A:E.108, A:S.110 GOL.10: 3 residues within 4Å: Chain A: N.257, W.267, W.290 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.257 GOL.11: 4 residues within 4Å: Chain A: K.118, Q.122, D.171, F.172 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.118 Water bridges: A:K.118, A:Q.122, A:D.171, A:D.173

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.12: 2 residues within 4Å: Chain A: K.151, S.197 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.197 Water bridges: A:K.151, A:K.151 Salt bridges: A:K.151

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.13: 4 residues within 4Å: Chain A: L.25, Y.26, Q.104, E.153 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Attia, M.A. et al., In vitro and in vivo characterization of threeCellvibrio japonicusglycoside hydrolase family 5 members reveals potent xyloglucan backbone-cleaving functions. Biotechnol Biofuels (2018)

Release Date

2018-02-07

Peptides

Cellulase, putative, cel5D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cellulase, putative, cel5D

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