SMTL ID : 5p9f.1

BTK IN COMPLEX WITH GDC-0834

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

monomer

Ligands

1 x 2VL: N-{3-[6-({4-[(2R)-1,4-dimethyl-3-oxopiperazin-2-yl]phenyl}amino)-4-methyl-5-oxo-4,5-dihydropyrazin-2-yl]-2-methylphenyl }-4,5,6,7-tetrahydro-1-benzothiophene-2-carboxamide(Non-covalent)

2VL.1: 23 residues within 4Å: Chain A: E.27, L.28, G.29, T.30, G.31, Q.32, F.33, V.36, A.48, K.50, T.94, E.95, Y.96, M.97, A.98, G.100, D.141, N.146, L.148, S.158, D.159, V.166, Y.171 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.28, A:L.28, A:Q.32, A:F.33, A:V.36, A:V.36, A:V.36, A:D.159, A:V.166 Hydrogen bonds: A:M.97, A:M.97 Water bridges: A:G.31, A:C.101, A:R.145, A:R.145, A:R.145, A:N.146

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: Y.218, E.219, R.220, F.221 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.218, A:R.220 Water bridges: A:Y.218, A:E.219 EDO.3: 8 residues within 4Å: Chain A: R.140, D.141, L.142, P.180, W.183, S.184, F.194, A.202 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.142, A:L.142, A:S.198 Water bridges: A:R.140, A:R.140 EDO.4: 2 residues within 4Å: Chain A: W.41, Y.81 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.81 EDO.5: 2 residues within 4Å: Chain A: K.265, S.269 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.265

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 5 residues within 4Å: Chain A: F.24, L.25, K.26, E.27, K.37 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.25, A:E.27, A:K.37 Water bridges: A:E.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bender, A.T. et al., Ability of Bruton's Tyrosine Kinase Inhibitors to Sequester Y551 and Prevent Phosphorylation Determines Potency for Inhibition of Fc Receptor but not B-Cell Receptor Signaling. Mol. Pharmacol. (2017)

Release Date

2017-05-24

Peptides

Tyrosine-protein kinase BTK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase BTK

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