5pbd.1 | SWISS-MODEL Template Library

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SMTL ID : 5pbd.1

PanDDA analysis group deposition -- Crystal Structure of BAZ2B in complex with N09682a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1:	5 residues within 4Å: Chain A: V.59, Y.67, F.109, N.110 Ligands: TYZ.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.110
EDO.2:	5 residues within 4Å: Chain A: M.41, I.42, E.45, K.130, T.134 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.45, A:T.134

1 x TYZ: PARA ACETAMIDO BENZOIC ACID(Non-covalent)

TYZ.3:

6 residues within 4Å:

Chain A: P.54, V.59, V.64, N.110, I.116
Ligands: EDO.1

5 PLIP interactions:

5 interactions with chain A

Hydrophobic interactions: A:V.59, A:V.64, A:I.116
Hydrogen bonds: A:N.110
Water bridges: A:P.54

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Pearce, N.M. et al., A multi-crystal method for extracting obscured crystallographic states from conventionally uninterpretable electron density. Nat Commun (2017)

Release Date

2017-03-15

Peptides

Bromodomain adjacent to zinc finger domain protein 2B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain adjacent to zinc finger domain protein 2B

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