SMTL ID : 5pnx.1 (1 other biounit)

PanDDA analysis group deposition -- Crystal Structure of BRD1 in complex with N10128a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: Y.109, N.110 Ligands: EDO.2, M3I.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.110 EDO.2: 6 residues within 4Å: Chain A: I.54, F.55, C.106, F.116 Ligands: EDO.1, M3I.3 1 PLIP interactions: 1 interactions with chain A Water bridges: A:C.106

1 x M3I: 5-methyl-1,2-oxazol-3-amine(Non-covalent)

M3I.3: 8 residues within 4Å: Chain A: I.54, F.55, Q.57, V.59, M.75, D.76 Ligands: EDO.1, EDO.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.54, A:V.59 Hydrogen bonds: A:Q.57 Water bridges: A:M.75, A:M.75, A:C.106

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 1 residues within 4Å: Chain A: K.108 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pearce, N.M. et al., A multi-crystal method for extracting obscured crystallographic states from conventionally uninterpretable electron density. Nat Commun (2017)

Release Date

2017-03-15

Peptides

Bromodomain-containing protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 1

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