SMTL ID : 5q0c.2 (1 other biounit)

Human liver fructose-1,6-bisphosphatase 1 (fructose 1,6-bisphosphate 1-phosphatase, E.C.3.1.3.11) complexed with the allosteric inhibitor 1-(5-bromo-1,3-thiazol-2-yl)-3-[5-(4-methoxyphenyl)thiophen-2-yl]sulfonylurea and with fructose-2,6-diphosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

4 x 96G: N-[(5-bromo-1,3-thiazol-2-yl)carbamoyl]-5-(4-methoxyphenyl)thiophene-2-sulfonamide(Non-covalent)

96G.1: 16 residues within 4Å: Chain A: M.19, K.21, G.22, R.23, A.25, G.27, T.28, G.29, E.30, L.31, T.32, T.178, Q.180 Chain C: T.28, G.29 Ligands: 96G.5 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:K.21, A:K.21, A:A.25, A:L.31, A:L.31 Hydrogen bonds: A:G.27, A:G.27, A:G.27, A:T.28, A:G.29, A:L.31, A:T.32 96G.3: 15 residues within 4Å: Chain B: M.19, K.21, G.22, R.23, A.25, G.27, T.28, G.29, E.30, L.31, T.32, T.178, Q.180 Chain D: G.29 Ligands: 96G.7 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:K.21, B:A.25 Hydrogen bonds: B:G.27, B:G.27, B:G.27, B:T.28, B:G.29, B:L.31, B:T.32, B:T.32 Water bridges: B:E.30, B:E.30 96G.5: 16 residues within 4Å: Chain A: G.29, T.32 Chain C: M.19, K.21, G.22, R.23, A.25, G.27, T.28, G.29, E.30, L.31, T.32, T.178, Q.180 Ligands: 96G.1 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:K.21, C:K.21, C:A.25, C:L.31 Hydrogen bonds: C:G.27, C:G.27, C:G.27, C:T.28, C:G.29, C:L.31, C:T.32, C:T.32 96G.7: 16 residues within 4Å: Chain B: T.28, G.29 Chain D: M.19, K.21, G.22, R.23, A.25, G.27, T.28, G.29, E.30, L.31, T.32, T.178, Q.180 Ligands: 96G.3 13 PLIP interactions: 13 interactions with chain D Hydrophobic interactions: D:K.21, D:A.25, D:L.31 Hydrogen bonds: D:G.27, D:G.27, D:G.27, D:T.28, D:G.29, D:L.31, D:T.32, D:T.32 Water bridges: D:E.30, D:E.30

4 x FDP: 2,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)

FDP.2: 17 residues within 4Å: Chain A: D.119, D.122, G.123, S.124, S.125, N.213, Y.216, Y.245, G.247, S.248, M.249, F.263, Y.265, K.275, L.276, E.281 Chain B: R.244 18 PLIP interactions: 15 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:D.119, A:D.122, A:D.122, A:G.123, A:S.124, A:S.124, A:S.125, A:N.213, A:Y.216, A:M.249, A:Y.265, A:K.275 Water bridges: A:S.125, B:R.244, B:R.244 Salt bridges: A:K.275, A:K.275, B:R.244 FDP.4: 15 residues within 4Å: Chain A: R.244 Chain B: D.122, G.123, S.124, S.125, N.213, Y.216, Y.245, G.247, S.248, M.249, Y.265, K.275, L.276, E.281 18 PLIP interactions: 15 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:D.122, B:G.123, B:S.124, B:S.124, B:S.124, B:S.125, B:N.213, B:Y.245, B:M.249, B:Y.265, B:K.275, B:E.281 Water bridges: B:S.125, A:R.244, A:R.244 Salt bridges: B:K.275, B:K.275, A:R.244 FDP.6: 14 residues within 4Å: Chain C: D.122, G.123, S.124, S.125, N.213, Y.216, Y.245, G.247, S.248, M.249, Y.265, K.275, E.281 Chain D: R.244 20 PLIP interactions: 1 interactions with chain D, 19 interactions with chain C Salt bridges: D:R.244, C:K.275, C:K.275 Hydrogen bonds: C:D.122, C:G.123, C:S.124, C:S.124, C:S.124, C:S.125, C:N.213, C:Y.245, C:M.249, C:K.275, C:E.281 Water bridges: C:S.125, C:S.125, C:Y.216, C:Y.245, C:G.247, C:K.275 FDP.8: 14 residues within 4Å: Chain C: R.244 Chain D: D.122, G.123, S.124, S.125, N.213, Y.216, Y.245, G.247, S.248, M.249, Y.265, K.275, E.281 20 PLIP interactions: 18 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:D.122, D:D.122, D:G.123, D:S.124, D:S.124, D:S.125, D:N.213, D:Y.216, D:Y.245, D:M.249, D:Y.265, D:Y.265, D:K.275, D:E.281 Water bridges: D:S.125, D:S.125, C:R.244 Salt bridges: D:K.275, D:K.275, C:R.244

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruf, A. et al., Human liver fructose-1,6-bisphosphatase 1 (fructose 1,6-bisphosphate 1-phosphatase, E.C.3.1.3.11) complexed with theallosteric inhibitor 1-(5-bromo-1,3-thiazol-2-yl)-3-[5-(4-methoxyphenyl)thiophen-2-yl]sulfonylurea and with f2,6p. To be published

Release Date

2019-01-09

Peptides

Fructose-1,6-bisphosphatase isozyme 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

Fructose-1,6-bisphosphatase isozyme 2

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