5qem.1 | SWISS-MODEL Template Library

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SMTL ID : 5qem.1

PanDDA analysis group deposition -- Crystal structure of PTP1B in complex with compound_XST00000217b

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

3 x JLG: 2-(thiophen-2-yl)-1,3-thiazole-4-carboxylic acid(Covalent)(Non-covalent)

JLG.1:	6 residues within 4Å: Chain A: E.2, M.235, P.241, S.242, A.278, M.282 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.241, A:M.282
JLG.2:	5 residues within 4Å: Chain A: E.76, R.238, K.239, D.240, S.243 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:E.76 Hydrogen bonds: A:K.239, A:D.240, A:S.243, A:S.243 Salt bridges: A:R.238 pi-Cation interactions: A:R.238
JLG.3:	9 residues within 4Å: Chain A: P.89, V.92, A.122, Q.123, Y.124, M.133, I.134, F.135, E.136 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:M.133, A:F.135 Water bridges: A:Q.123

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.4:

3 residues within 4Å:

Chain A: H.54, S.55, F.256

3 PLIP interactions:

3 interactions with chain A

Hydrogen bonds: A:H.54, A:H.54, A:H.54

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Keedy, D.A. et al., An expanded allosteric network in PTP1B by multitemperature crystallography, fragment screening, and covalent tethering. Elife (2018)

Release Date

2018-10-10

Peptides

Tyrosine-protein phosphatase non-receptor type 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Tyrosine-protein phosphatase non-receptor type 1

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