SMTL ID : 5qib.1

PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of HAO1 in complex with FMOPL000388a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

1 x FNR: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL(Non-covalent)

FNR.1: 23 residues within 4Å: Chain A: Y.27, Y.28, A.80, T.81, A.82, S.109, W.111, Q.131, Y.133, T.159, K.237, S.259, H.261, G.262, R.264, D.292, G.293, G.294, R.296, V.314, G.315, R.316 Ligands: GX7.2 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:Y.27, A:Y.28, A:T.81, A:R.316 Hydrogen bonds: A:A.80, A:A.80, A:A.82, A:Q.131, A:K.237, A:K.237, A:K.237, A:S.259, A:G.262, A:G.294, A:G.315, A:R.316 Water bridges: A:H.261, A:D.292, A:D.292, A:V.295, A:V.295, A:R.316, A:R.316 Salt bridges: A:R.296, A:R.316

1 x GX7: 5-(cyclohexylamino)pyrimidine-2,4(1H,3H)-dione(Covalent)

GX7.2: 11 residues within 4Å: Chain A: Y.27, M.83, W.111, Y.133, R.168, F.176, M.184, L.206, H.261, R.264 Ligands: FNR.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.111, A:W.111, A:F.176, A:L.206, A:L.206 Hydrogen bonds: A:Y.27, A:R.168, A:R.168, A:H.261, A:R.264, A:R.264

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

MacKinnon, S. et al., PanDDA analysis group deposition of models with modelled events (e.g. bound ligands). To Be Published

Release Date

2018-07-18

Peptides

Hydroxyacid oxidase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hydroxyacid oxidase 1

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