SMTL ID : 5qid.1

PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of HAO1 in complex with Z1787627869

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 23 residues within 4Å: Chain A: Y.27, Y.28, A.80, T.81, A.82, S.109, W.111, Q.131, Y.133, T.159, K.237, S.259, H.261, G.262, R.264, D.292, G.293, G.294, R.296, V.314, G.315, R.316, P.317 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:Y.27, A:Y.28, A:T.81, A:R.316 Hydrogen bonds: A:A.80, A:A.82, A:Q.131, A:K.237, A:K.237, A:S.259, A:G.262, A:G.293, A:G.294, A:G.315, A:R.316 Water bridges: A:D.292, A:D.292, A:V.295, A:V.295, A:R.316, A:R.316 Salt bridges: A:R.296, A:R.316

1 x GWY: 5-chloranyl-~{N}-methyl-~{N}-[[(3~{S})-oxolan-3-yl]methyl]pyrimidin-4-amine(Covalent)

GWY.2: 6 residues within 4Å: Chain A: V.58, A.59, T.61, E.339, R.342, L.343 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.343 Hydrogen bonds: A:T.61, A:R.342, A:R.342

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

MacKinnon, S. et al., PanDDA analysis group deposition of models with modelled events (e.g. bound ligands). To Be Published

Release Date

2018-07-18

Peptides

Hydroxyacid oxidase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hydroxyacid oxidase 1

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