SMTL ID : 5qig.1

PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of HAO1 in complex with Z1407672867

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 22 residues within 4Å: Chain A: Y.27, Y.28, A.80, T.81, A.82, S.109, W.111, Q.131, Y.133, T.159, K.237, S.259, H.261, G.262, R.264, D.292, G.293, G.294, R.296, V.314, G.315, R.316 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:Y.27, A:Y.28, A:T.81, A:R.316 Hydrogen bonds: A:A.80, A:A.82, A:Q.131, A:K.237, A:K.237, A:S.259, A:G.262, A:G.294, A:G.315, A:R.316 Water bridges: A:D.292, A:D.292, A:V.295, A:V.295, A:R.316, A:R.316 Salt bridges: A:R.296, A:R.316

2 x GWP: 2-cyclopropyl-1~{H}-imidazole-4-carboxamide(Non-covalent)

GWP.2: 4 residues within 4Å: Chain A: R.227, S.231, G.252, N.254 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:R.227 Hydrogen bonds: A:S.231, A:N.254 Water bridges: A:R.227, A:R.227 GWP.3: 6 residues within 4Å: Chain A: R.5, L.6, Y.12, F.324, K.328, D.332 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.328 Hydrogen bonds: A:L.6, A:L.6, A:Y.12 pi-Stacking: A:F.324

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

MacKinnon, S. et al., PanDDA analysis group deposition of models with modelled events (e.g. bound ligands). To Be Published

Release Date

2018-07-18

Peptides

Hydroxyacid oxidase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hydroxyacid oxidase 1

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