SMTL ID : 5qis.1

Covalent fragment group deposition -- Crystal Structure of OUTB2 in complex with PCM-0102500

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

monomer

Ligands

1 x J5G: N-(5-methyl-1,2-oxazol-3-yl)acetamide(Covalent)

J5G.1: 10 residues within 4Å: Chain A: G.42, D.43, R.44, N.45, C.46, F.47, E.169, S.218, H.219, Y.220 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.220 Hydrogen bonds: A:D.43, A:D.43, A:R.44, A:C.46, A:S.218

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 5 residues within 4Å: Chain A: F.93, D.124, H.125, Q.128, M.166 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.124 Water bridges: A:Q.128

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 8 residues within 4Å: Chain A: F.1, N.2, L.3, I.4, S.5, K.39, T.40, K.41 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.3 EDO.4: 4 residues within 4Å: Chain A: A.83, G.84, F.85, R.139 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.139 EDO.5: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sethi, R. et al., Covalent fragment group deposition. To Be Published

Release Date

2019-12-18

Peptides

Ubiquitin thioesterase OTUB2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ubiquitin thioesterase OTUB2

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