SMTL ID : 5qit.1

Covalent fragment group deposition -- Crystal Structure of OUTB2 in complex with PCM-0102821

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.46 Å

Oligo State

monomer

Ligands

1 x J5J: N-[(E)-(3-methylphenyl)methylidene]acetamide(Covalent)

J5J.1: 9 residues within 4Å: Chain A: G.42, D.43, R.44, N.45, C.46, F.47, E.169, T.217, S.218 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.43, A:D.43, A:R.44, A:C.46

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: R.33, Q.187, Y.212 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.33, A:Q.187 EDO.3: 1 residues within 4Å: Chain A: E.29 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.29 EDO.5: 8 residues within 4Å: Chain A: F.1, N.2, L.3, I.4, S.5, K.39, T.40, K.41 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.3

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 4 residues within 4Å: Chain A: F.93, D.124, H.125, Q.128 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.124 Water bridges: A:Q.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sethi, R. et al., Covalent fragment group deposition. To Be Published

Release Date

2019-12-18

Peptides

Ubiquitin thioesterase OTUB2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ubiquitin thioesterase OTUB2

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