SMTL ID : 5qoj.1

PanDDA analysis group deposition -- Crystal Structure of DCP2 (NUDT20) in complex with FMOCR000171b

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: A.49, F.53, D.59, K.61 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.59 Water bridges: A:R.50 EDO.2: 3 residues within 4Å: Chain A: P.129, N.130, K.131 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.131

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 4 residues within 4Å: Chain A: N.18, W.106, F.107, S.108 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.108

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 2 residues within 4Å: Chain A: S.29, R.102 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.29, A:R.102 Water bridges: A:L.26

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 7 residues within 4Å: Chain A: V.22, G.24, K.28, G.30, G.32, K.35, E.55 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.24, A:K.28, A:G.30, A:G.32

1 x JG4: 2-(thiophen-2-yl)-1H-imidazole(Non-covalent)

JG4.6: 5 residues within 4Å: Chain A: I.74, F.133, M.134, I.136, P.137 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.74 Hydrogen bonds: A:F.133 pi-Stacking: A:F.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nelson, E.R. et al., PanDDA analysis group deposition. To Be Published

Release Date

2019-05-08

Peptides

DCP2 (NUDT20): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DCP2 (NUDT20)

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