SMTL ID : 5qqx.1

PanDDA analysis group deposition -- Crystal Structure of human ALAS2A in complex with Z373768900

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PLP.1: 16 residues within 4Å: Chain A: S.139, C.140, F.141, N.144, H.167, S.169, E.210, S.214, D.239, V.241, H.242, T.270, K.273, G.279 Chain B: T.302, T.303 15 PLIP interactions: 11 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:H.167, A:V.241 Hydrogen bonds: A:C.140, A:F.141, A:N.144, A:S.214, A:S.214, A:T.270, A:K.273, B:T.302, B:T.303, B:T.303 Salt bridges: A:K.273 pi-Stacking: A:H.167 Water bridges: B:S.138 PLP.5: 17 residues within 4Å: Chain A: F.301, T.302, T.303 Chain B: S.139, C.140, F.141, N.144, H.167, S.169, E.210, S.214, D.239, V.241, H.242, T.270, K.273, G.279 15 PLIP interactions: 12 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:H.167, B:V.241 Hydrogen bonds: B:C.140, B:F.141, B:N.144, B:S.169, B:S.214, B:S.214, B:T.270, B:K.273, B:G.279, A:T.303, A:T.303 pi-Stacking: B:H.167 Water bridges: A:S.138

3 x NUA: N-(1-ethyl-1H-pyrazol-4-yl)cyclobutanecarboxamide(Non-covalent)

NUA.2: 1 residues within 4Å: Chain A: P.156 No protein-ligand interaction detected (PLIP) NUA.3: 6 residues within 4Å: Chain A: S.455, Y.456 Chain B: T.150, K.153, I.154, Y.295 7 PLIP interactions: 3 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:Y.456, A:Y.456, B:T.150, B:K.153, B:Y.295, B:Y.295 Hydrogen bonds: A:Y.456 NUA.4: 6 residues within 4Å: Chain A: T.150, K.153, I.154, Y.295 Chain B: S.455, Y.456 8 PLIP interactions: 3 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:Y.456, B:Y.456, A:T.150, A:K.153, A:Y.295, A:Y.295 Hydrogen bonds: B:Y.456 pi-Cation interactions: A:K.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bezerra, G.A. et al., PanDDA analysis group deposition. To Be Published

Release Date

2019-08-07

Peptides

5-aminolevulinate synthase, erythroid-specific, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

5-aminolevulinate synthase, erythroid-specific, mitochondrial

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