SMTL ID : 5qtb.1

T. brucei FPPS in complex with CID 303798

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

homo-dimer

Ligands

2 x PJG: N~1~-[(3s,5s,7s)-tricyclo[3.3.1.1~3,7~]decan-1-yl]ethane-1,2-diamine(Non-covalent)

PJG.1: 5 residues within 4Å: Chain A: T.44, V.103, D.106, A.131, D.134 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.44, A:V.103, A:A.131 PJG.4: 5 residues within 4Å: Chain B: T.44, V.103, D.106, A.131, D.134 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:T.44, B:V.103, B:A.131

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 4 residues within 4Å: Chain A: R.33, Y.36 Chain B: T.179, D.183 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.179, A:R.33 PEG.5: 4 residues within 4Å: Chain A: T.179, D.183 Chain B: R.33, Y.36 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.33, A:D.183

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 5 residues within 4Å: Chain A: D.177, K.214, D.258, D.275, C.281 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.214 Salt bridges: A:D.177, A:D.258 DMS.6: 5 residues within 4Å: Chain B: D.177, K.214, D.258, D.275, C.281 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.214 Salt bridges: B:D.177, B:D.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Muenzker, L., T. brucei FPPS in complex with CID 303798. To Be Published

Release Date

2020-10-07

Peptides

Farnesyl pyrophosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Farnesyl pyrophosphate synthase

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