SMTL ID : 5qtf.1

T. brucei FPPS in complex with CID 144539

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

homo-dimer

Ligands

2 x PK7: 1-(3-chloro-4-fluorophenyl)methanamine(Non-covalent)

PK7.1: 4 residues within 4Å: Chain A: V.259, F.263, E.320, Q.325 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.263 Hydrogen bonds: A:E.320, A:E.320 pi-Stacking: A:F.263 PK7.6: 4 residues within 4Å: Chain B: V.259, F.263, E.320, Q.325 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:F.263 Hydrogen bonds: B:E.320 pi-Stacking: B:F.263

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 6 residues within 4Å: Chain A: K.26, F.27 Chain B: R.165, T.169, Y.213, Y.217 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.213, A:K.26 Salt bridges: B:R.165 PO4.4: 7 residues within 4Å: Chain A: D.177, Y.207, V.211, K.214, Q.254, D.258, C.281 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.177, A:Q.254, A:D.258 Water bridges: A:C.281 Salt bridges: A:K.214, A:K.280 PO4.7: 6 residues within 4Å: Chain A: R.165, T.169, Y.213, Y.217 Chain B: K.26, F.27 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.169, B:K.26 Salt bridges: A:R.165 PO4.9: 7 residues within 4Å: Chain B: D.177, Y.207, V.211, K.214, Q.254, D.258, C.281 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:D.177, B:Q.254, B:D.258 Water bridges: B:C.281 Salt bridges: B:K.214, B:K.280

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: Y.50, N.51, R.52, E.95 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.52, A:R.52, A:G.53, A:E.95 Water bridges: A:K.49, A:N.51 NA.8: 4 residues within 4Å: Chain B: Y.50, N.51, R.52, E.95 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.52, B:R.52, B:G.53, B:E.95 Water bridges: B:K.49, B:N.51

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 7 residues within 4Å: Chain A: Y.101, L.102, D.105, T.170, Q.174, K.214, Y.218 No protein-ligand interaction detected (PLIP) GOL.10: 7 residues within 4Å: Chain B: Y.101, L.102, D.105, T.170, Q.174, K.214, Y.218 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Muenzker, L., T. brucei FPPS in complex with CID 144539. To Be Published

Release Date

2020-10-07

Peptides

Farnesyl pyrophosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Farnesyl pyrophosphate synthase

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