SMTL ID : 5qxi.1

PanDDA analysis group deposition -- Crystal Structure of ATAD2 in complex with PC587

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

1 x RGY: (4R,4aS,7aS,9S)-3,10-dimethyl-5,6,7,7a,8,9-hexahydro-4H-4a,9-epiminopyrrolo[3',4':5,6]cyclohepta[1,2-d][1,2]oxazol-4-ol(Non-covalent)

RGY.1: 4 residues within 4Å: Chain A: E.113, E.114, L.115, D.116 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:D.116

1 x TQS: (4R,4aR,7aS,9R)-3,10-dimethyl-5,6,7,7a,8,9-hexahydro-4H-4a,9-epiminopyrrolo[3',4':5,6]cyclohepta[1,2-d][1,2]oxazol-4-ol(Non-covalent)

TQS.2: 6 residues within 4Å: Chain A: V.30, V.35, V.40, Y.85, N.86, I.96 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.30, A:V.35, A:V.40, A:Y.85 Hydrogen bonds: A:E.39, A:N.86 pi-Stacking: A:Y.43

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: R.89, R.94 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.89, A:R.89 Salt bridges: A:R.89, A:R.94 SO4.4: 2 residues within 4Å: Chain A: K.59, K.64 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.59, A:K.59, A:K.64 Salt bridges: A:K.59, A:K.64

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 4 residues within 4Å: Chain A: E.10, E.114, L.115, D.116 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.10, A:E.114, A:D.116 EDO.6: 4 residues within 4Å: Chain A: S.55, S.58, K.59, L.62 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Snee, M. et al., PanDDA analysis group deposition - Bromodomain of human ATAD2 fragment screening. To Be Published

Release Date

2020-04-08

Peptides

ATPase family AAA domain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ATPase family AAA domain-containing protein 2

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