SMTL ID : 5qxj.1

PanDDA analysis group deposition -- Crystal Structure of ATAD2 in complex with PC578

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.46 Å

Oligo State

monomer

Ligands

1 x RGV: (3aS,8S,9aS)-10-methyl-4-oxo-1,4,6,8,9,9a-hexahydro-3a,8-epiminocyclohepta[1,2-c:4,5-c']dipyrrole-2(3H)-carbaldehyde(Non-covalent)

RGV.1: 4 residues within 4Å: Chain A: Y.108, K.112, L.115, E.117 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.115 Hydrogen bonds: A:L.115 Salt bridges: A:E.120

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: R.89, R.94 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.89 Salt bridges: A:R.89, A:R.94 SO4.3: 2 residues within 4Å: Chain A: K.59, K.64 6 PLIP interactions: 6 interactions with chain A Water bridges: A:K.59, A:K.59, A:K.59, A:K.64 Salt bridges: A:K.59, A:K.64

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: E.10, E.114, L.115, D.116, F.119 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.10, A:E.114, A:D.116 EDO.5: 4 residues within 4Å: Chain A: E.113, E.114, L.115, D.116 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.115 Water bridges: A:D.116 EDO.6: 4 residues within 4Å: Chain A: S.55, S.58, K.59, L.62 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Snee, M. et al., PanDDA analysis group deposition - Bromodomain of human ATAD2 fragment screening. To Be Published

Release Date

2020-04-08

Peptides

ATPase family AAA domain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ATPase family AAA domain-containing protein 2

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