SMTL ID : 5qxl.1

PanDDA analysis group deposition -- Crystal Structure of ATAD2 in complex with DF776

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

monomer

Ligands

1 x RGD: cyclobutyl[(2S,3aS,6aS)-6a-(2-hydroxyethyl)-2-(hydroxymethyl)hexahydro-5H-furo[2,3-c]pyrrol-5-yl]methanone(Non-covalent)

RGD.1: 7 residues within 4Å: Chain A: V.30, F.31, V.35, V.40, Y.85, N.86, I.96 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.30, A:V.30, A:F.31, A:V.35, A:V.40, A:I.96, A:I.96 Hydrogen bonds: A:N.86 Water bridges: A:D.93, A:D.93

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: R.89, R.94 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.89, A:R.89 Salt bridges: A:R.89, A:R.94 SO4.3: 1 residues within 4Å: Chain A: K.64 6 PLIP interactions: 6 interactions with chain A Water bridges: A:E.49, A:K.59, A:K.59, A:K.64 Salt bridges: A:K.59, A:K.64

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: E.10, E.114, L.115, D.116, F.119 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.10, A:E.10, A:E.114, A:D.116 EDO.5: 4 residues within 4Å: Chain A: E.113, E.114, L.115, D.116 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.115 EDO.6: 4 residues within 4Å: Chain A: S.55, S.58, K.59, L.62 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Snee, M. et al., PanDDA analysis group deposition - Bromodomain of human ATAD2 fragment screening. To Be Published

Release Date

2020-04-08

Peptides

ATPase family AAA domain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ATPase family AAA domain-containing protein 2

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