SMTL ID : 5qxt.1

PanDDA analysis group deposition -- Crystal Structure of ATAD2 in complex with JKH47

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

2 x RJ7: ethyl (2S,3S)-2-fluoro-3-hydroxy-3-(pyridin-3-yl)propanoate(Non-covalent)

RJ7.1: 2 residues within 4Å: Chain A: S.55, S.58 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.55 RJ7.2: 7 residues within 4Å: Chain A: H.20, A.23, T.32, L.53, S.54, I.57 Ligands: EDO.7 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.23

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: R.89, R.94 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.89, A:R.89 Salt bridges: A:R.89, A:R.94 SO4.4: 2 residues within 4Å: Chain A: K.59, K.64 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.59, A:K.59, A:K.64 Salt bridges: A:K.59, A:K.64

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 5 residues within 4Å: Chain A: E.10, E.114, L.115, D.116, F.119 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.10, A:E.10, A:E.114, A:D.116 EDO.6: 3 residues within 4Å: Chain A: E.113, L.115, D.116 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.112 Water bridges: A:D.116 EDO.7: 3 residues within 4Å: Chain A: A.23, I.24 Ligands: RJ7.2 2 PLIP interactions: 2 interactions with chain A Water bridges: A:A.23, A:I.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Snee, M. et al., PanDDA analysis group deposition - Bromodomain of human ATAD2 fragment screening. To Be Published

Release Date

2020-04-08

Peptides

ATPase family AAA domain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ATPase family AAA domain-containing protein 2

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