SMTL ID : 5qxu.1

PanDDA analysis group deposition -- Crystal Structure of ATAD2 in complex with RZ373

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.89, R.94 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.89, A:R.94, A:R.94 Salt bridges: A:R.89, A:R.94 SO4.2: 1 residues within 4Å: Chain A: K.64 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.59, A:K.59, A:K.64 Salt bridges: A:K.59, A:K.64

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: E.10, E.114, L.115, D.116, F.119 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.10, A:E.114, A:D.116 EDO.4: 4 residues within 4Å: Chain A: E.113, E.114, L.115, D.116 No protein-ligand interaction detected (PLIP) EDO.5: 4 residues within 4Å: Chain A: S.55, S.58, K.59, L.62 No protein-ligand interaction detected (PLIP) EDO.7: 4 residues within 4Å: Chain A: Y.85, N.86, I.96 Ligands: RJD.6 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.86, A:G.92, A:G.92 EDO.8: 3 residues within 4Å: Chain A: R.29, E.39 Ligands: RJD.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.29, A:R.29, A:E.39 Water bridges: A:D.36, A:E.39

1 x RJD: (3S,6S)-N~3~-cyclopropyl-N~1~-(cyclopropylmethyl)-3,6-dimethylpiperazine-1,3-dicarboxamide(Non-covalent)

RJD.6: 11 residues within 4Å: Chain A: R.29, V.30, K.33, V.35, E.39, V.40, Y.85, N.86, I.96 Ligands: EDO.7, EDO.8 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:K.33, A:V.35, A:E.39, A:V.40, A:Y.85 Hydrogen bonds: A:V.30, A:N.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Snee, M. et al., PanDDA analysis group deposition - Bromodomain of human ATAD2 fragment screening. To Be Published

Release Date

2020-04-08

Peptides

ATPase family AAA domain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ATPase family AAA domain-containing protein 2

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