SMTL ID : 5qxy.1

PanDDA analysis group deposition -- Crystal Structure of ATAD2 in complex with JKH93A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

1 x RK7: ethyl (2R,3S)-3-(5-bromopyridin-2-yl)-2-fluoro-3-hydroxypropanoate(Non-covalent)

RK7.1: 3 residues within 4Å: Chain A: R.16, H.20, I.57 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:H.20

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: R.89, R.94 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.89, A:R.94 SO4.3: 2 residues within 4Å: Chain A: K.59, K.64 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.64, A:K.64 Salt bridges: A:K.59, A:K.64

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: E.113, E.114, L.115, D.116 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.115 Water bridges: A:D.116 EDO.5: 4 residues within 4Å: Chain A: S.55, S.58, K.59, L.62 No protein-ligand interaction detected (PLIP) EDO.6: 3 residues within 4Å: Chain A: A.23, T.32, S.54 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Snee, M. et al., PanDDA analysis group deposition - Bromodomain of human ATAD2 fragment screening. To Be Published

Release Date

2020-04-08

Peptides

ATPase family AAA domain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ATPase family AAA domain-containing protein 2

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