SMTL ID : 5r4x.1

XChem fragment screen -- CRYSTAL STRUCTURE OF THE BROMODOMAIN OF THE HUMAN ATAD2 in complex with N13413a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x K3D: 4-acetyl-N-ethylpiperazine-1-carboxamide(Non-covalent)

K3D.1: 8 residues within 4Å: Chain A: V.30, V.35, E.39, V.40, Y.43, Y.85, N.86, I.96 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.35, A:I.96 Hydrogen bonds: A:N.86

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: R.89, R.94 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.89, A:R.94 SO4.3: 2 residues within 4Å: Chain A: K.59, K.64 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.59, A:K.59, A:K.59 Salt bridges: A:K.59, A:K.64

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: E.10, E.114, L.115, D.116, F.119 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.10, A:E.114, A:D.116 EDO.5: 4 residues within 4Å: Chain A: E.113, E.114, L.115, D.116 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.115 EDO.6: 4 residues within 4Å: Chain A: S.55, S.58, K.59, L.62 No protein-ligand interaction detected (PLIP) EDO.7: 3 residues within 4Å: Chain A: K.69, L.72, L.115 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Talon, R. et al., XChem fragment screen. To Be Published

Release Date

2020-05-13

Peptides

ATPase family AAA domain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ATPase family AAA domain-containing protein 2

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