SMTL ID : 5rga.1

Crystal Structure of Kemp Eliminase HG3 with bound transition state analogue, 277K

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

homo-dimer

Ligands

2 x 6NT: 6-NITROBENZOTRIAZOLE(Non-covalent)

6NT.1: 12 residues within 4Å: Chain A: A.23, W.46, P.47, E.48, K.52, G.85, M.86, D.129, L.238, M.239, T.267, F.269 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.46 Hydrogen bonds: A:D.129 Water bridges: A:M.86, A:M.86 6NT.4: 11 residues within 4Å: Chain B: A.23, W.46, P.47, E.48, G.85, M.86, D.129, L.238, M.239, T.267, F.269 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:W.46, B:W.46 Hydrogen bonds: B:D.129, B:D.129 Water bridges: B:M.86, B:M.86

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.120 Chain B: S.59, N.62 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.59, B:S.59, B:N.62 Water bridges: A:R.120 Salt bridges: A:R.120 SO4.3: 1 residues within 4Å: Chain A: K.194 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.194

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Broom, A. et al., Ensemble-based enzyme design can recapitulate the effects of laboratory directed evolution in silico. Nat Commun (2020)

Release Date

2020-07-22

Peptides

Kemp Eliminase HG3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Kemp Eliminase HG3

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