SMTL ID : 5rgd.1 (1 other biounit)

Crystal Structure of Kemp Eliminase HG3.14 with bound transition state analogue, 277K

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x 6NT: 6-NITROBENZOTRIAZOLE(Non-covalent)

6NT.1: 14 residues within 4Å: Chain A: A.23, W.46, P.47, E.48, Q.52, G.85, C.86, W.89, D.129, M.174, L.238, M.239, T.267, F.269 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.46 Hydrogen bonds: A:Q.52, A:D.129 Water bridges: A:G.85, A:G.85

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: S.140, L.141, R.192 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.141 Water bridges: A:R.192 Salt bridges: A:R.192 SO4.3: 1 residues within 4Å: Chain A: K.194 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.194 SO4.4: 2 residues within 4Å: Chain A: R.163, P.202 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Broom, A. et al., Ensemble-based enzyme design can recapitulate the effects of laboratory directed evolution in silico. Nat Commun (2020)

Release Date

2020-07-22

Peptides

Kemp Eliminase HG3.14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Kemp Eliminase HG3.14

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